PUBLICATIONS
APR. 2018; NAT. GENETICS
DNA methylation loss in late-replicating domains is linked to mitotic cell divisions
Zhou W*, Dinh HQ*, Ramjan Z, Weisenberger DJ, Nicolet CM, Shen H**, Laird PW**, Berman BP**
Nat. Genetics 2018 April 2;50(4):591. PMID: 29610480
FEB. 2018; NATURE
Asparagine availability governs metastasis in a model of breast cancer.
Knott SRV*, Wagenblast E*, Kim SY, Soto M, Khan S, Gable AL, Maceli AR, Dickopf S, Erard N, Harrell C, Perou CM, Wilkinson JE, Hannon GJ. (*first author)
Nature. 2018 Feb 7. doi: 10.1038/nature25465 PMID:29414946
AUG. 2017; GUT
Lin DC*, Dinh HQ*, Xie JJ**, Mayakonda A, Jiang YY, Ding LW, He JZ, Xu XE, Hao JJ, Wang MR, Xu LY, Li EM**, Berman BP** and Koeffler HP**
Gut, 2017 Aug 31. PMID:28860350
JUL. 2017; CIRCULATION
Exosomal microRNA Transfer into Macrophages Mediates Cellular Postconditioning
de Couto G, Gallet R, Cambier L, Makkar N, Jaghatspanyan E, Dawkins J, Berman BP**, Marbán E**
Circulation, 2017 Jul 11;136(2):200-214. PMID: 28411247
JUL. 2017; MOL CELL
A CRISPR Resource for Individual, Combinatorial, or Multiplexed Gene Knockout.
Erard N, Knott SRV**, Hannon GJ**.
Mol Cell. 2017 Jul 20;67(2):348-354.e3. doi: 10.1016/j.molcel.2017.06.030. PMID:28732207
MAY 2017; CANCER RES.
Genomic and epigenomic heterogeneity of hepatocellular carcinoma
Lin DC*, Mayakonda A*, Dinh HQ*, Lin L, Huang P, Liu X, Ding L, Wang J, Berman BP**, Yin D**, Song EW**, Koeffler HP**
Cancer Res., 2017 May 1;77(9):2255-2265. PMID: 28302680
2017; ONCOTARGET
The PAX8 Cistrome in Epithelial Ovarian Cancer
Emily K. Adler*, Rosario I. Corona*, Janet M. Lee, Norma Rodriguez-Malave, Paulette Mhawech-Fauceglia, Heidi Sowter, Dennis J. Hazelett**, Kate Lawrenson**, and Simon A. Gayther**
Oncotarget 2017 8(65):108316—108332. PMID:29312534
2017; IMMUNITY
Yáñez A, Coetzee SG, Olsson A, Muench DE, Berman BP, Hazelett DJ, Salomonis N, Grimes HL, and Goodridge HS
Immunity 47(5):890—902. PMID:29166589
2017; NATURE GENETICS
Phelan C, Kuchenbaeker KB, Tyrer JP, Kar S, Lawrenson K, Winham SJ, …~100+additional authors…, Hazelett DJ, Offit K, Simard J, Schmutzler RK, Monteiro AN, Couch FJ, Berchuck A, Chenevix-Trench G, Goode EL, Sellers TA, Gayther SA, Anoniou AC, Pharoah PDP
Nature Genetics 2017. PMID:28346442
2017; J NATL CANCER INST
Two Novel Susceptibility Loci for Prostate Cancer in Men of African Ancestry
Conti DV, Wang K, Sheng X, Bensen JT, Hazelett DJ, et al.
J Natl Cancer Inst 2017. PMCID: PMC5448553
DEC. 2016;NAT. GENETICS
Hao JJ*, Lin DC*, Dinh HQ*, Mayakonda A, Jiang YY, Chang C, Jiang Y, Lu CC, Shi ZZ, Xu X, Zhang Y, Cai Y, Wang JW, Zhan QM, Wei WQ**,Berman BP**, Wang MR**, Koeffler HP**
Nat. Genetics. 2016 Dec; 48(12):1500-1507. PMCID: PMC5127772
2016; NAT COMMUN
Functional mechanisms underlying pleiotropic risk alleles at the 19p13.1 breast-ovarian cancer susceptibility locus
Lawrenson K, Kar S [...] Gayther SA
Nat Commun. 2016 7:12675
2016; CEBP
The OncoArray Consortium: a Network for Understanding the Genetic Architecture of Common Cancers
Amos C, Dennis J, Wang Z, 17 additional authors, Hazelett DJ, and 63 additional authors
CEBP 2016. PMID:27697780
2016; BRITISH JOURNAL OF CANCER
Enrichment of putative PAX8 target genes at serous epithelial ovarian cancer susceptibility loci
Kar S, Adler E, Tyrer J, Hazelett D and 19 other authors
British Journal of Cancer 2016. PMID:28103614
2016; SCIENTIFIC REPORTS
Parkinson’s Disease Risk Functionality
Coetzee SG, Brundin P, Hazelett DJ, Coetzee G
Scientific Reports 2016 6:30509. PMID:27461410
2016; CEBP
Rand KA, Song C, Dean E, Serie DJ, Curtin K, + 99 additional authors, Hazelett DJ, Cozen W,Haiman CA
CEBP 2016 PMID:27587788
2016; J NATL CANCER INST
Prostate Cancer Susceptibility in Men of African Ancestry at 8q24
Han Y, Rand KA, Hazelett DJ and 62 additional authors
J Natl Cancer Inst 2016 108 (7):pii PMID: 26823525
2016; CELL CYCLE
Hazelett DJ, Conti DV, Han Y, Al Oloma AA, Easton D, Eeles RA, Kote-Jarai Z, Haiman CA and Coetzee GA
Cell Cycle 2016 vol. 15 (1):22-24. PMID: 26771711
2015; INVEST OPTHALMOL VIS SCI
Identification of a novel mucin gene HCG22 associated with steroid-induced ocular hypertension
Jeong S, Patel N, Edlund C, Hartiala J, Hazelett DJ, Itakura T, Avery RL, Davis JL, Flynn HW, Lalwani G, Puliafito C, Wafapoor H, Hijikata M, Keicho N, Gao X, Argueso P, Allayee H, Coetzee GA, Pletcher MT, Conti DV, Schwartz SG, Eaton AM, Fini ME
Invest Opthalmol Vis Sci 2015 vol. 56 (4):2737-48. PMID: 25813999
MAY 2015; GENOME BIOLOGY
Inferring Regulatory Element Landscapes and Transcription Factor Networks from Cancer Methylomes
Yao L, Shen H, Laird PW, Farnham PJ, Berman BP
Genome Biology. 2015 May 21; 16(1):105. PMCID: PMC4460959
APR. 2015; GENOME RESEARCH
The role of DNA methylation in directing the functional organization of the cancer epigenome
Lay FD*, Liu Y*, Kelly TK, Witt H, Farnham PJ, Jones PA, Berman BP
Genome Research 2015 Apr; 25(4):467. PMCID: PMC4381519
APR. 2015; NATURE
A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis.
Wagenblast E, Soto M, Gutiérrez-Ángel S, Hartl CA, Gable AL, Maceli AR, Erard N, Williams AM, Kim SY, Dickopf S, Harrell JC, Smith AD, Perou CM, Wilkinson JE, Hannon GJ, Knott SR.
Nature. 2015 Apr 16;520(7547):358-62. doi: 10.1038/nature14403. Epub 2015 Apr 8.
PMID: 25855289
2015; HUM MOL GENET
Fine mapping and regulatory profiling of ovarian cancer susceptibility loci discovered by GWAS
Coetzee S, Shen H, Hazelett D, Lawrenson K, Li Q, Freedman MF, Pharoah PDP, Noushmehr H, Coetzee G. Gayther SA
Hum Mol Genet. 2015 24(13):3595-607
2015; NAT GENET
Genome-wide significant risk associations for mucinous epithelial ovarian carcinoma
Kelemen LE*, Lawrenson K* Tyrer J, Li Q, The Ovarian Cancer Association Consortium, Freedman M, Pharoah PDP, Gayther SA*, Andrew Berchuck A*
Nat Genet. 2015 47(8):888-97
2015; J CLIN ONCOL
Song H, Dicks E [...] Gayther SA*, Pharoah PD*
J Clin Oncol. 2015 33(26):2901-7
2015; J NATL CANCER INST.
Ramus SJ, Song H [...] Gayther SA*
J Natl Cancer Inst. 2015 107(11).
2015; NAT COMMUN
Lawrenson K, Li Q, Kar S …. Monteiro A, Pharoah PD, Gayther SA*, Freedman ML*
Nat Commun. 2015 Sep 22;6:823
2015; NAT MED
Spisák S, Lawrenson K, Fu Y … Gayther SA*, Joung JK*, Freedman ML*
Nat Med. 2015 21(11):1357-63
2015; CARCINOGENESIS
Common variants at the CHEK2 gene locus and risk of epithelial ovarian cancer
Lawrenson K, Iversen ES, Tyrer J, Weber RP, Concannon P, Hazelett DJ, and 152 additional authors
Carcinogenesis 2015 vol. 36 (11):1341-53. PMID: 26424751
2015; BIOINFORMATICIAN
Coetzee SG, Coetzee GA, Hazelett DJ
Bioinformatics 2015 vol. 31 (23):3847-9. PMID: 26272984
2015; HUM MOL GEN
Han Y*, Hazelett DJ* and 80 additional authors
Hum Mol Gen 2015 vol. 24 (19):5603-18. PMID: 26823525
2015; HUM MEL GEN
Al Olama AA, Dadaev T, Hazelett DJ and 74 additional authors
Hum Mol Gen 2015 vol. 24 (19):5589-602. PMID: 26025378
2015; NAT GENT
Kuchenbaecker K, Ramus S, Tyrer J, Shen H, Lawrenson K, Beesley J, Lee J, Spindler T, Lin Y, Pejovic T, Bean Y, Li Q, Coetzee S, Hazelett D, and 68 additional authors
Nat Genet 2015 vol. 47 pp. 164-71. PMID: 25581431
DEC. 2014; MOL CELL
A computational algorithm to predict shRNA potency.
Knott SR, Maceli AR, Erard N, Chang K, Marran K, Zhou X, Gordon A, El Demerdash O, Wagenblast E, Kim S, Fellmann C, Hannon GJ.
Mol Cell. 2014 Dec 18;56(6):796-807. doi: 10.1016/j.molcel.2014.10.025. Epub 2014 Nov 26. PMID: 25435137
2014; NAT GENET
A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer
Al Olama AA, Kote-Jarai Z, Berndt SI, Conti D, Schumacher F, Han Y, Benlloch S, Hazelett DJ and 160 additional authors
Nat Genet 2014 vol. 46 pp. 1103-9. PMID: 25217961
2014; NAT COMMUN
A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus
Cozen W*, Timofeeva MN*, Li D*, Diepstra A*, Hazelett D*, Delahaye-Sourdeix M* and 59 additionla authors
Nat Commun 2014 vol. 5 pp. 3856. PMID: 24920014
2014; BMC GENOMICS
Rhie SK, Hazelett DJ, Coetzee SG, Yan C, Noushmehr H, Coetzee GA
BMC Genomics 2014 vol. 15 (1) pp. 331. PMID: 24885402
2014; PLOS GEN
Comprehensive functional annotation of 77 prostate cancer risk loci.
Hazelett DJ, Rhie SK, Gaddis M, Yan C, Lakeland DL, Coetzee SG; Ellipse/GAME-ON consortium; Practical consortium, Henderson BE, Noushmehr H, Cozen W, Kote-Jarai Z, Eeles RA, Easton DF, Haiman CA, Lu W, Farnham PJ, Coetzee GA
PLoS Gen 2014 vol. 10 e1004102. PMID: 24497837
2013; NAT COMMUN
Permuth-Wey J, Lawrenson K [...] Gayther SA
Nat Commun. 2013 4:1627 23535648
2013; CELL CYCLE
A rare variant, which destroys a FoxA1 site at 8q24, is associated with prostate cancer risk.
Hazelett DJ, Coetzee SG, Coetzee GA
Cell Cycle 2013 vol. 12 pp. 379-80. PMID: 23255135
DEC. 2012; GENOME RESEARCH
Genome-wide Mapping of Nucleosome Positioning and DNA Methylation Within Individual DNA Molecules
Kelly TK*, Liu Y*, Lay FD, Liang G, Berman BP, Jones PA
Genome Research 2012 Dec;22(12):2497-506. PMID: 22960375
OCT. 2012;NUCLEIC ACIDS RESEARCH
Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H
Nucleic Acids Research. 2012 Oct;40(18):e139. PMCID: PMC3467035
JUL. 2012;GENOME BIOLOGY
Bis-SNP: Combined cytosine methylation and SNP calling for bisulfite sequence data
Liu Y, Siegmund KD, Laird PW, Berman BP
Genome Biology. 2012 Jul 11;13(7):R61. PMID: 22784381
JAN. 2012; CELL
Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae.
Knott SR, Peace JM, Ostrow AZ, Gan Y, Rex AE, Viggiani CJ, Tavaré S, Aparicio OM.
Cell. 2012 Jan 20;148(1-2):99-111. doi: 10.1016/j.cell.2011.12.012.
PMID: 22265405
2011;NAT.GENETICS
Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CPE, van Dijk CM, Tollenaar RAEM, Van Den Berg D, Laird PW
Nat. Genetics. 2011 v.44(1):40-6. PMCID: PMC4309644
2010; NAT GENET
Common variants at 19p13 are associated with susceptibility to ovarian cancer
Bolton KL, Tyrer J [...] Gayther SA
Nat Genet 2010; 42:880-884. 20852633
2010; NAT GENET
A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24
Goode EL, Chenevix-Trench G [...] Gayther SA*, Pharoah PD*
Nat Genet 2010; 42:874-879. 20852632
2010; LAB INVEST
Lee J, Mhawech-Fauceglia P, Lee N, Parsanian JC, Lin YG, Gayther SA*, Lawrenson K*
2013 Lab Invest. 2013 93:528-42 23459371
2010; NAT GENET
Pharoah PD, Tsai YY [...] Gayther SA*, Schildkraut JM*
Nat Genet. 2013 45:362-70. 23535730
2009;IEEE CONFERENCE ON E-SCIENCE
Scientific workflow applications on Amazon EC2
Juve G, Deelman E, Vahi K, Mehta G, Berriman B, Berman BP, Maechling P
IEEE Conference on E-Science. 2009 Dec. 9-11, pp. 59-66. arXiv ID:1005.2718 DOI:10.1109/ESCIW.2009.5408002
2009; HUM MOL GENET
Quaye L, Dafou D, Ramus SJ, Song, H, Gentry-Maharaj A, Notaridou M, Högdall E, Kruger Kjaer S, Christensen L, Högdall C, Easton DF, Jacobs IJ, Menon U, Pharoah PDP, Gayther SA
Hum Mol Genet 2009; 18:1869–1878. 19270026
2009; NAT GENET
A genome-wide association study identifies a novel ovarian cancer susceptibility locus on 9p22.2
Song H, Ramus SJ [...] Gayther SA
Nat Genet 2009; 41:996-1000. 19648919
2009; BIOINFORMATICS
Hazelett DJ, Lakeland DL, Weiss JB
Bioinformatics 2009 vol. 25 (13) pp. 1617-24. PMID: 19401399
2008;PLOS ONE
Jia L*, Berman BP*, Jariwala U, Yan X, Cogan JP, Walters A, Chen T, Buchanan G, Frenkel B, Coetzee GA
PLoS ONE 2008 vol. 3 (11) pp. e3645.PMID: 18997859
2008; CLIN CANCER RES
Effects of common germline genetic variation in cell cycle genes on ovarian cancer survival
Song H, Högdall E, Ramus SJ, Dicioccio RA, Högdall C, Quaye L, McGuire V, Whittemore AS, Shah M, Greenberg D, Easton DF, Kjaer SK, Pharoah PD, Gayther SA
Clin Cancer Res 2008; 14:1090-1095 18281541